If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 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'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 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'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 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'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ), 'gf_id' => 'HOM05D000591', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000591' ), 'data_identifier' => 'HOM05D000591', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000591', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '945', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24060' => 'bna', 'A01p35400' => 'bna', 'A03p23090' => 'bna', 'A03p41040' => 'bna', 'A04p03520' => 'bna', 'A04p31380' => 'bna', 'A04p34580' => 'bna', 'A05p01090' => 'bna', 'A05p02050' => 'bna', 'A05p15960' => 'bna', 'A05p30490' => 'bna', 'A06p18380' => 'bna', 'A06p28180' => 'bna', 'A06p35270' => 'bna', 'A08p03800' => 'bna', 'A09p06520' => 'bna', 'A09p43570' => 'bna', 'Aa31LG10G11600' => 'aar', 'Aa31LG10G4430' => 'aar', 'Aa31LG11G3690' => 'aar', 'Aa31LG1G14720' => 'aar', 'Aa31LG1G28090' => 'aar', 'Aa31LG4G17920' => 'aar', 'Aa31LG4G18710' => 'aar', 'Aa31LG8G5900' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4840' => 'aag', 'Actinidia00461' => 'ach', 'Actinidia01836' => 'ach', 'Actinidia07991' => 'ach', 'Actinidia07992' => 'ach', 'Actinidia08685' => 'ach', 'Actinidia12062' => 'ach', 'Actinidia17960' => 'ach', 'Actinidia20208' => 'ach', 'Actinidia20272' => 'ach', 'Actinidia28095' => 'ach', 'Actinidia29147' => 'ach', 'Actinidia34255' => 'ach', 'Actinidia34256' => 'ach', 'Actinidia36504' => 'ach', 'Actinidia37878' => 'ach', 'Ah.02g124020' => 'amhyb', 'Ah.03g144410' => 'amhyb', 'Ah.03g148790' => 'amhyb', 'Ah.04g150870' => 'amhyb', 'Ah.05g179140' => 'amhyb', 'AL1G56950' => 'aly', 'AL3G32480' => 'aly', 'AL4G39110' => 'aly', 'AL4G46170' => 'aly', 'AL5G29130' => 'aly', 'AL5G30680' => 'aly', 'AL5G38120' => 'aly', 'AL6G36010' => 'aly', 'AL939U10010' => 'aly', 'Aqoxy1G00401' => 'aox', 'Aqoxy2G00439' => 'aox', 'Aqoxy6G01417' => 'aox', 'Aqoxy7G00016' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E73VR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2EIF5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2LKP7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.550YKG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6BHY52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.952IHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9FR3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E495RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX0095' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F01VGX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I66G12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9STKW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF0R52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QMQV82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZVQ2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR7DXQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGP4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V28U7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZR00S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU1TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XR8H09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRYJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0VCZZ' => 'arhy', 'AT1G49580' => 'ath', 'AT2G41140' => 'ath', 'AT2G46700' => 'ath', 'AT3G19100' => 'ath', 'AT3G49370' => 'ath', 'AT3G50530' => 'ath', 'AT3G56760' => 'ath', 'AT5G24430' => 'ath', 'ATR0307G133' => 'atr', 'ATR0579G091' => 'atr', 'ATR0598G128' => 'atr', 'ATR1133G001' => 'atr', 'Atru.chr1.1399' => 'acertr', 'Atru.chr1.1400' => 'acertr', 'Atru.chr12.2362' => 'acertr', 'Atru.chr3.401' => 'acertr', 'Atru.chr3.808' => 'acertr', 'Atru.chr5.2776' => 'acertr', 'Atru.chr5.743' => 'acertr', 'AUR62001956' => 'cqu', 'AUR62003366' => 'cqu', 'AUR62003851' => 'cqu', 'AUR62004542' => 'cqu', 'AUR62006023' => 'cqu', 'AUR62018366' => 'cqu', 'AUR62022714' => 'cqu', 'AUR62027471' => 'cqu', 'AUR62030296' => 'cqu', 'AUR62035602' => 'cqu', 'AUR62035603' => 'cqu', 'AUR62044101' => 'cqu', 'BcaB01g00610' => 'bca', 'BcaB01g00716' => 'bca', 'BcaB01g03489' => 'bca', 'BcaB02g08349' => 'bca', 'BcaB02g09586' => 'bca', 'BcaB04g17321' => 'bca', 'BcaB04g19024' => 'bca', 'BcaB04g19824' => 'bca', 'BcaB04g20721' => 'bca', 'BcaB05g23221' => 'bca', 'BcaB06g25966' => 'bca', 'BcaB06g29480' => 'bca', 'BcaC01g02405' => 'bca', 'BcaC01g03650' => 'bca', 'BcaC01g04083' => 'bca', 'BcaC01g05359' => 'bca', 'BcaC02g07011' => 'bca', 'BcaC02g09868' => 'bca', 'BcaC02g12649' => 'bca', 'BcaC02g12754' => 'bca', 'BcaC02g12848' => 'bca', 'BcaC04g23539' => 'bca', 'BcaC05g28538' => 'bca', 'BcaC07g37030' => 'bca', 'BcaC07g39404' => 'bca', 'BcaC07g39514' => 'bca', 'BcaC09g48872' => 'bca', 'BcaC09g50035' => 'bca', 'BcaNung01234' => 'bca', 'BcaNung02022' => 'bca', 'BcaNung05628' => 'bca', 'BcaNung05629' => 'bca', 'BolC1t00990H' => 'bol', 'BolC1t02915H' => 'bol', 'BolC1t04458H' => 'bol', 'BolC1t05275H' => 'bol', 'BolC3t15125H' => 'bol', 'BolC3t16783H' => 'bol', 'BolC3t17304H' => 'bol', 'BolC3t18817H' => 'bol', 'BolC3t19853H' => 'bol', 'BolC4t21778H' => 'bol', 'BolC4t21889H' => 'bol', 'BolC4t25227H' => 'bol', 'BolC4t28384H' => 'bol', 'BolC4t28723H' => 'bol', 'BolC5t30397H' => 'bol', 'BolC5t33339H' => 'bol', 'BolC7t43082H' => 'bol', 'BolC7t44849H' => 'bol', 'BolC8t47190H' => 'bol', 'BolC8t50057H' => 'bol', 'BolC8t50180H' => 'bol', 'BolC9t53627H' => 'bol', 'BolC9t53638H' => 'bol', 'BraA01t02318Z' => 'bra', 'BraA01t03621Z' => 'bra', 'BraA03t11530Z' => 'bra', 'BraA03t13261Z' => 'bra', 'BraA04t16083Z' => 'bra', 'BraA04t18596Z' => 'bra', 'BraA04t18916Z' => 'bra', 'BraA05t19109Z' => 'bra', 'BraA05t19201Z' => 'bra', 'BraA05t21889Z' => 'bra', 'BraA06t24919Z' => 'bra', 'BraA06t25761Z' => 'bra', 'BraA06t26452Z' => 'bra', 'BraA08t32409Z' => 'bra', 'BraA09t36295Z' => 'bra', 'BraA09t39819Z' => 'bra', 'C01p29740' => 'bna', 'C01p44910' => 'bna', 'C02p14300' => 'bna', 'C03p25390' => 'bna', 'C03p27490' => 'bna', 'C03p45190' => 'bna', 'C03p50110' => 'bna', 'C03p65650' => 'bna', 'C04p01230' => 'bna', 'C04p02440' => 'bna', 'C04p35740' => 'bna', 'C04p55040' => 'bna', 'C04p68790' => 'bna', 'C04p72370' => 'bna', 'C05p46120' => 'bna', 'C07p25630' => 'bna', 'C07p43240' => 'bna', 'C08p03970' => 'bna', 'C08p24410' => 'bna', 'C08p25580' => 'bna', 'C09p07280' => 'bna', 'CAN.G1045.44' => 'can', 'CAN.G1527.15' => 'can', 'CAN.G165.32' => 'can', 'CAN.G322.23' => 'can', 'CAN.G836.62' => 'can', 'CAN.G960.64' => 'can', 'CANSAT01G0577' => 'cansat', 'CANSAT21G2015' => 'cansat', 'CANSAT25G1627' => 'cansat', 'CANSAT56G2607' => 'cansat', 'CANSAT64G1595' => 'cansat', 'CARHR039620' => 'chi', 'CARHR039630' => 'chi', 'CARHR094530' => 'chi', 'CARHR108390' => 'chi', 'CARHR136230' => 'chi', 'CARHR142050' => 'chi', 'CARHR158310' => 'chi', 'CARHR159460' => 'chi', 'CARHR159470' => 'chi', 'CARHR159480' => 'chi', 'CARHR160030' => 'chi', 'CARHR166900' => 'chi', 'CARHR166910' => 'chi', 'CARHR166920' => 'chi', 'CARHR188980' => 'chi', 'CARHR188990' => 'chi', 'CARHR290320' => 'chi', 'Carub.0001s3878' => 'cru', 'Carub.0003s1895' => 'cru', 'Carub.0004s2345' => 'cru', 'Carub.0004s2941' => 'cru', 'Carub.0005s1570' => 'cru', 'Carub.0005s1686' => 'cru', 'Carub.0005s2350' => 'cru', 'Carub.0006s2226' => 'cru', 'Ca_08381_v3' => 'car', 'Ca_09534_v3' => 'car', 'Ca_16755_v3' => 'car', 'Ca_18665_v3' => 'car', 'Ca_22191_v3' => 'car', 'Ca_24786_v3' => 'car', 'CBR_g29580' => 'cbr', 'CBR_g8938' => 'cbr', 'Cc00_g04640' => 'ccan', 'Cc00_g08210' => 'ccan', 'Cc00_g15390' => 'ccan', 'Cc00_g35340' => 'ccan', 'Cc00_g35540' => 'ccan', 'Cc02_g00970' => 'ccan', 'Cc02_g00990' => 'ccan', 'Cc02_g18540' => 'ccan', 'Cc02_g39810' => 'ccan', 'Cc06_g19670' => 'ccan', 'Cc06_g19800' => 'ccan', 'Cc07_g05820' => 'ccan', 'CDE03G0231' => 'cde', 'CDE04G2039' => 'cde', 'CDE04G3333' => 'cde', 'CDE06G1744' => 'cde', 'CDE07G0513' => 'cde', 'CDE09G0534' => 'cde', 'CDE11G0094' => 'cde', 'CDE12G0680' => 'cde', 'Cfa003755' => 'cfa', 'Cfa003993' => 'cfa', 'Cfa003994' => 'cfa', 'Cfa005451' => 'cfa', 'Cfa006974' => 'cfa', 'Cfa016176' => 'cfa', 'Ciclev10011368m.g' => 'ccl', 'Ciclev10019386m.g' => 'ccl', 'Ciclev10019463m.g' => 'ccl', 'Ciclev10025192m.g' => 'ccl', 'Ciclev10028073m.g' => 'ccl', 'CiPaw.01G021900' => 'cil', 'CiPaw.01G080500' => 'cil', 'CiPaw.02G009700' => 'cil', 'CiPaw.02G044000' => 'cil', 'CiPaw.05G054100' => 'cil', 'CiPaw.05G202800' => 'cil', 'CiPaw.08G131500' => 'cil', 'CiPaw.09G049000' => 'cil', 'CiPaw.10G041100' => 'cil', 'CiPaw.10G119400' => 'cil', 'ClCG01G000150' => 'cla', 'ClCG01G016680' => 'cla', 'ClCG02G005760' => 'cla', 'ClCG02G013240' => 'cla', 'ClCG04G005670' => 'cla', 'ClCG06G002670' => 'cla', 'ClCG10G013690' => 'cla', 'COL.COLO4_01864' => 'col', 'COL.COLO4_04062' => 'col', 'COL.COLO4_04881' => 'col', 'COL.COLO4_06268' => 'col', 'COL.COLO4_07072' => 'col', 'COL.COLO4_11378' => 'col', 'COL.COLO4_14349' => 'col', 'COL.COLO4_14350' => 'col', 'COL.COLO4_15570' => 'col', 'COL.COLO4_15576' => 'col', 'COL.COLO4_23735' => 'col', 'COL.COLO4_28675' => 'col', 'COL.COLO4_28677' => 'col', 'COL.COLO4_32689' => 'col', 'COL.COLO4_34327' => 'col', 'COL.COLO4_35170' => 'col', 'COL.COLO4_35173' => 'col', 'COL.COLO4_35823' => 'col', 'Cpa.g.sc144.5' => 'cpa', 'Cpa.g.sc3.143' => 'cpa', 'Cpa.g.sc6.254' => 'cpa', 'Cpa.g.sc6.383' => 'cpa', 'Cpa.g.sc62.39' => 'cpa', 'Cpa.g.sc92.82' => 'cpa', 'Cre04.g228208' => 'cre', 'Cre05.g235450' => 'cre', 'Cre06.g267650' => 'cre', 'Cre08.g359900' => 'cre', 'Cre14.g626466' => 'cre', 'Cre17.g700133' => 'cre', 'Cre17.g719450' => 'cre', 'Cre17.g735550' => 'cre', 'CsaV3_2G017270' => 'csa', 'CsaV3_3G042960' => 'csa', 'CsaV3_4G029480' => 'csa', 'CsaV3_5G000170' => 'csa', 'CsaV3_6G008800' => 'csa', 'CsaV3_6G043100' => 'csa', 'CsaV3_7G008760' => 'csa', 'CSS0000922' => 'camsi', 'CSS0011815' => 'camsi', 'CSS0012696' => 'camsi', 'CSS0014965' => 'camsi', 'CSS0024009' => 'camsi', 'CSS0025544' => 'camsi', 'CSS0026778' => 'camsi', 'CSS0029323' => 'camsi', 'CSS0031138' => 'camsi', 'CSS0031281' => 'camsi', 'CSS0042007' => 'camsi', 'CSS0043116' => 'camsi', 'CSS0044193' => 'camsi', 'CSS0045285' => 'camsi', 'DCAR_002984' => 'dca', 'DCAR_008492' => 'dca', 'DCAR_010578' => 'dca', 'DCAR_010909' => 'dca', 'DCAR_016603' => 'dca', 'DCAR_020581' => 'dca', 'DCAR_021501' => 'dca', 'DCAR_022060' => 'dca', 'DCAR_024284' => 'dca', 'DCAR_025714' => 'dca', 'DCAR_025717' => 'dca', 'DCAR_025718' => 'dca', 'Dinv03201' => 'din', 'Dinv17894' => 'din', 'Dinv21467' => 'din', 'Dinv23585' => 'din', 'Dinv29228' => 'din', 'Dinv29963' => 'din', 'Dinv29964' => 'din', 'Dinv32631' => 'din', 'Dinv34247' => 'din', 'Dinv35372' => 'din', 'Dinv39878' => 'din', 'Dinv42130' => 'din', 'Duzib106G1467' => 'dzi', 'Duzib128G0720' => 'dzi', 'Duzib132G0948' => 'dzi', 'Duzib133G0653' => 'dzi', 'Duzib138G0492' => 'dzi', 'Duzib147G0843' => 'dzi', 'Duzib187G0579' => 'dzi', 'Duzib205G0265' => 'dzi', 'Duzib248G0275' => 'dzi', 'Duzib264G0055' => 'dzi', 'ECA232G3232' => 'eca', 'ECA232G3920' => 'eca', 'ECA233G1232' => 'eca', 'ECA236G0275' => 'eca', 'ECA236G2781' => 'eca', 'ECA238G1478' => 'eca', 'ECA246G5199' => 'eca', 'ECA248G2933' => 'eca', 'EL10Ac1g00205' => 'bvu', 'EL10Ac3g05202' => 'bvu', 'EL10Ac3g07256' => 'bvu', 'EL10Ac6g15149' => 'bvu', 'EL10Ac8g19411' => 'bvu', 'EL10Ac8g19412' => 'bvu', 'Eucgr.E00022' => 'egr', 'Eucgr.G01496' => 'egr', 'Eucgr.I00953' => 'egr', 'Eucgr.I02347' => 'egr', 'Eucgr.K00421' => 'egr', 'Eucgr.K01647' => 'egr', 'Eucgr.K01649' => 'egr', 'FAN01G1762' => 'fan', 'FAN01G1769' => 'fan', 'FAN03G0858' => 'fan', 'FAN03G1823' => 'fan', 'FAN06G1620' => 'fan', 'FAN06G2941' => 'fan', 'FAN10G0363' => 'fan', 'FAN10G2545' => 'fan', 'FAN10G3014' => 'fan', 'FAN10G3425' => 'fan', 'FAN15G0978' => 'fan', 'FAN19G2266' => 'fan', 'FAN20G1517' => 'fan', 'FAN23G3080' => 'fan', 'FAN24G0911' => 'fan', 'FAN26G1290' => 'fan', 'FAN27G3266' => 'fan', 'FAN28G1520' => 'fan', 'FAN28G2377' => 'fan', 'FvH4_1g15620' => 'fve', 'FvH4_2g06730' => 'fve', 'FvH4_7g17350' => 'fve', 'FvH4_7g32610' => 'fve', 'Glyma.01G166100' => 'gma', 'Glyma.01G184300' => 'gma', 'Glyma.02G048300' => 'gma', 'Glyma.02G134600' => 'gma', 'Glyma.02G163300' => 'gma', 'Glyma.04G231000' => 'gma', 'Glyma.05G090900' => 'gma', 'Glyma.06G134200' => 'gma', 'Glyma.07G051600' => 'gma', 'Glyma.07G210600' => 'gma', 'Glyma.10G096600' => 'gma', 'Glyma.10G096800' => 'gma', 'Glyma.11G058000' => 'gma', 'Glyma.16G020600' => 'gma', 'Glyma.18G113966' => 'gma', 'Glyma.19G129200' => 'gma', 'Gohir.A03G191500' => 'ghi', 'Gohir.A07G135100' => 'ghi', 'Gohir.A08G103200' => 'ghi', 'Gohir.A09G115300' => 'ghi', 'Gohir.A11G099700' => 'ghi', 'Gohir.A11G190000' => 'ghi', 'Gohir.A12G070000' => 'ghi', 'Gohir.A12G083299' => 'ghi', 'Gohir.A13G038900' => 'ghi', 'Gohir.D02G212400' => 'ghi', 'Gohir.D07G139900' => 'ghi', 'Gohir.D08G115000' => 'ghi', 'Gohir.D09G112100' => 'ghi', 'Gohir.D11G104200' => 'ghi', 'Gohir.D11G196800' => 'ghi', 'Gohir.D12G088800' => 'ghi', 'Gohir.D13G037400' => 'ghi', 'Gorai.001G152000' => 'gra', 'Gorai.004G123900' => 'gra', 'Gorai.005G240400' => 'gra', 'Gorai.006G129900' => 'gra', 'Gorai.007G111600' => 'gra', 'Gorai.007G210700' => 'gra', 'Gorai.008G074300' => 'gra', 'Gorai.013G042100' => 'gra', 'GSVIVG01006578001' => 'vvi', 'GSVIVG01007478001' => 'vvi', 'GSVIVG01025745001' => 'vvi', 'GSVIVG01027409001' => 'vvi', 'GSVIVG01031789001' => 'vvi', 'GSVIVG01038623001' => 'vvi', 'HanXRQChr01g0008091' => 'han', 'HanXRQChr04g0104341' => 'han', 'HanXRQChr04g0120131' => 'han', 'HanXRQChr04g0128311' => 'han', 'HanXRQChr05g0139291' => 'han', 'HanXRQChr06g0170951' => 'han', 'HanXRQChr08g0225701' => 'han', 'HanXRQChr10g0306151' => 'han', 'HanXRQChr12g0379311' => 'han', 'HanXRQChr13g0388161' => 'han', 'HanXRQChr14g0430671' => 'han', 'HanXRQChr14g0448281' => 'han', 'HanXRQChr15g0490421' => 'han', 'Haze_00276' => 'cav', 'Haze_01906' => 'cav', 'Haze_03761' => 'cav', 'Haze_15433' => 'cav', 'Haze_15710' => 'cav', 'Haze_20241' => 'cav', 'Hma1.2p1_0047F.1_g027680' => 'hma', 'Hma1.2p1_0075F.1_g039200' => 'hma', 'Hma1.2p1_0180F.1_g079850' => 'hma', 'Hma1.2p1_0309F.1_g120540' => 'hma', 'Hma1.2p1_0333F.1_g128340' => 'hma', 'Hma1.2p1_0380F.1_g139950' => 'hma', 'Hma1.2p1_0956F.1_g241280' => 'hma', 'Hma1.2p1_1415F.1_g281970' => 'hma', 'Hma1.2p1_1543F.1_g289770' => 'hma', 'Hma1.2p1_2288F.1_g318940' => 'hma', 'HPP92_001026' => 'vpl', 'HPP92_003597' => 'vpl', 'HPP92_007140' => 'vpl', 'HPP92_007144' => 'vpl', 'HPP92_009339' => 'vpl', 'HPP92_009375' => 'vpl', 'HPP92_014463' => 'vpl', 'HPP92_025361' => 'vpl', 'HPP92_025415' => 'vpl', 'Hund00323' => 'sun', 'Hund13570' => 'sun', 'Hund16492' => 'sun', 'Hund16739' => 'sun', 'Hund19085' => 'sun', 'Hund21039' => 'sun', 'Hund24579' => 'sun', 'Lalb_Chr02g0156641' => 'lal', 'Lalb_Chr04g0261361' => 'lal', 'Lalb_Chr05g0219021' => 'lal', 'Lalb_Chr05g0226671' => 'lal', 'Lalb_Chr05g0226681' => 'lal', 'Lalb_Chr08g0239811' => 'lal', 'Lalb_Chr09g0323021' => 'lal', 'Lalb_Chr11g0067261' => 'lal', 'Lalb_Chr14g0365731' => 'lal', 'Lalb_Chr15g0076451' => 'lal', 'Lalb_Chr16g0384561' => 'lal', 'Lalb_Chr16g0384571' => 'lal', 'Lalb_Chr18g0044631' => 'lal', 'Lalb_Chr22g0357541' => 'lal', 'Lj1A1026T24' => 'lonja', 'Lj1C1026G9' => 'lonja', 'Lj1C1089G4' => 'lonja', 'Lj1g0002091' => 'lja', 'Lj1g0002216' => 'lja', 'Lj1g0008606' => 'lja', 'Lj2A468T72' => 'lonja', 'Lj2C1026T3' => 'lonja', 'Lj3A897T90' => 'lonja', 'Lj3g0024814' => 'lja', 'Lj4A139G83' => 'lonja', 'Lj4A218G43' => 'lonja', 'Lj4A315T26' => 'lonja', 'Lj4g0012343' => 'lja', 'Lj4g0016386' => 'lja', 'Lj5A207T76' => 'lonja', 'Lj7A495G54' => 'lonja', 'Lj7C59T2' => 'lonja', 'Lj7C61T7' => 'lonja', 'Lj9A603T44' => 'lonja', 'Lsat_1_v5_gn_2_75980' => 'lsa', 'Lsat_1_v5_gn_2_84380' => 'lsa', 'Lsat_1_v5_gn_3_91700' => 'lsa', 'Lsat_1_v5_gn_4_167020' => 'lsa', 'Lsat_1_v5_gn_5_156020' => 'lsa', 'Lsat_1_v5_gn_5_156800' => 'lsa', 'Lsat_1_v5_gn_7_620' => 'lsa', 'Lsat_1_v5_gn_7_87920' => 'lsa', 'Lsat_1_v5_gn_8_4600' => 'lsa', 'Lsat_1_v5_gn_9_50240' => 'lsa', 'Manes.01G241800' => 'mes', 'Manes.05G018400' => 'mes', 'Manes.05G191100' => 'mes', 'Manes.08G060300' => 'mes', 'Manes.09G003500' => 'mes', 'Manes.12G102000' => 'mes', 'Manes.13G126000' => 'mes', 'Manes.15G142700' => 'mes', 'Manes.17G094100' => 'mes', 'Mapoly0016s0157' => 'mpo', 'MBI02_g21205_MAGBIO' => 'mbi', 'MBI04_g25316_MAGBIO' => 'mbi', 'MBI06_g08195_MAGBIO' => 'mbi', 'MBI12_g07080_MAGBIO' => 'mbi', 'MBI19_g19214_MAGBIO' => 'mbi', 'MBI19_g37446_MAGBIO' => 'mbi', 'MBI19_g44266_MAGBIO' => 'mbi', 'MD01G1086500' => 'mdo', 'MD01G1227200' => 'mdo', 'MD02G1168300' => 'mdo', 'MD05G1075300' => 'mdo', 'MD07G1156500' => 'mdo', 'MD07G1297500' => 'mdo', 'MD10G1089900' => 'mdo', 'MD12G1095400' => 'mdo', 'MD14G1091300' => 'mdo', 'MD15G1280600' => 'mdo', 'Medtr3g092230' => 'mtr', 'Medtr4g086660' => 'mtr', 'Medtr5g017830' => 'mtr', 'Medtr5g022030' => 'mtr', 'Medtr7g089480' => 'mtr', 'Medtr7g118020' => 'mtr', 'Medtr8g079790' => 'mtr', 'MELO3C005914.2' => 'cme', 'MELO3C007546.2' => 'cme', 'MELO3C007904.2' => 'cme', 'MELO3C018436.2' => 'cme', 'MELO3C019099.2' => 'cme', 'MELO3C020930.2' => 'cme', 'MELO3C022260.2' => 'cme', 'MELO3C026598.2' => 'cme', 'Migut.B00313' => 'egut', 'Migut.B01909' => 'egut', 'Migut.F00998' => 'egut', 'Migut.H00457' => 'egut', 'Migut.H01152' => 'egut', 'Migut.K00141' => 'egut', 'Migut.K00817' => 'egut', 'MSTRG.15396' => 'ama', 'MSTRG.17377' => 'ama', 'MSTRG.19793' => 'ama', 'MSTRG.23770' => 'ama', 'MSTRG.2898' => 'ama', 'MSTRG.3413' => 'ama', 'MSTRG.36' => 'ama', 'MSTRG.8539' => 'ama', 'Nitab4.5_0000307g0210' => 'nta', 'Nitab4.5_0000310g0230' => 'nta', 'Nitab4.5_0000319g0240' => 'nta', 'Nitab4.5_0000440g0190' => 'nta', 'Nitab4.5_0000812g0060' => 'nta', 'Nitab4.5_0000864g0060' => 'nta', 'Nitab4.5_0001993g0050' => 'nta', 'Nitab4.5_0002462g0010' => 'nta', 'Nitab4.5_0003290g0010' => 'nta', 'Nitab4.5_0005583g0050' => 'nta', 'Nitab4.5_0011470g0010' => 'nta', 'Nn1g00398' => 'nnu', 'Nn1g05864' => 'nnu', 'Nn2g14665' => 'nnu', 'Nn3g18829' => 'nnu', 'Nn5g30185' => 'nnu', 'Nn7g36828' => 'nnu', 'Oeu004870.3' => 'oeu', 'Oeu005205.1' => 'oeu', 'Oeu007863.1' => 'oeu', 'Oeu008644.1' => 'oeu', 'Oeu009128.1' => 'oeu', 'Oeu010322.1' => 'oeu', 'Oeu017436.1' => 'oeu', 'Oeu021841.1' => 'oeu', 'Oeu022975.1' => 'oeu', 'Oeu024608.1' => 'oeu', 'Oeu037024.1' => 'oeu', 'Oeu052982.1' => 'oeu', 'Oeu057680.3' => 'oeu', 'Oeu057779.1' => 'oeu', 'Os03g0366200' => 'osa', 'Os06g0714200' => 'osa', 'Os07g0409900' => 'osa', 'Os07g0619800' => 'osa', 'Os07g0641200' => 'osa', 'Os10g0510700' => 'osa', 'Peaxi162Scf00003g00497' => 'pax', 'Peaxi162Scf00016g01636' => 'pax', 'Peaxi162Scf00049g01318' => 'pax', 'Peaxi162Scf00740g00562' => 'pax', 'Peaxi162Scf00767g00037' => 'pax', 'Peaxi162Scf00916g00219' => 'pax', 'PGR042G2074' => 'pgr', 'PGR042G2521' => 'pgr', 'PGR142G2731' => 'pgr', 'PGR142G3336' => 'pgr', 'PGSC0003DMG400000754' => 'stu', 'PGSC0003DMG400003213' => 'stu', 'PGSC0003DMG400008377' => 'stu', 'PGSC0003DMG400010059' => 'stu', 'PGSC0003DMG400025808' => 'stu', 'PGSC0003DMG400042796' => 'stu', 'PGSC0003DMG400044850' => 'stu', 'Phvul.001G121501' => 'pvu', 'Phvul.002G020800' => 'pvu', 'Phvul.003G246000' => 'pvu', 'Phvul.003G261700' => 'pvu', 'Phvul.003G294300' => 'pvu', 'Phvul.007G243100' => 'pvu', 'Phvul.009G050100' => 'pvu', 'Phvul.010G117600' => 'pvu', 'Potri.002G176700' => 'ptr', 'Potri.004G143700' => 'ptr', 'Potri.005G135900' => 'ptr', 'Potri.006G040500' => 'ptr', 'Potri.007G040800' => 'ptr', 'Potri.009G105700' => 'ptr', 'Potri.012G023300' => 'ptr', 'Potri.014G103500' => 'ptr', 'Potri.016G035500' => 'ptr', 'Pp3c13_4100' => 'ppa', 'Pp3c26_4540' => 'ppa', 'Pp3c3_5970' => 'ppa', 'Pp3c3_5990' => 'ppa', 'Pp3c4_25010' => 'ppa', 'Prupe.2G194900' => 'ppe', 'Prupe.2G317200' => 'ppe', 'Prupe.7G031700' => 'ppe', 'Prupe.7G136700' => 'ppe', 'Prupe.8G117200' => 'ppe', 'Psat2g048680' => 'psa', 'Psat2g165320' => 'psa', 'Psat3g001080' => 'psa', 'Psat3g079960' => 'psa', 'Psat4g088000' => 'psa', 'Psat5g073600' => 'psa', 'Psat6g218440' => 'psa', 'Psat7g121760' => 'psa', 'PSO017G7345' => 'pso', 'PSO063G5247' => 'pso', 'PSO135G0934' => 'pso', 'PSO170G5815' => 'pso', 'PSO339G1323' => 'pso', 'PSO384G3959' => 'pso', 'PSO384G4562' => 'pso', 'PSO541G2433' => 'pso', 'PSO675G2768' => 'pso', 'QL03p021712' => 'qlo', 'QL05p009032' => 'qlo', 'QL05p087003' => 'qlo', 'QL06p011412' => 'qlo', 'QL06p042385' => 'qlo', 'QL07p011460' => 'qlo', 'QL08p046590' => 'qlo', 'QL09p007431' => 'qlo', 'QL11p037407' => 'qlo', 'RcHm_v2.0_Chr1g0315491' => 'rch', 'RcHm_v2.0_Chr1g0360791' => 'rch', 'RcHm_v2.0_Chr1g0382501' => 'rch', 'RcHm_v2.0_Chr2g0104821' => 'rch', 'RcHm_v2.0_Chr2g0104961' => 'rch', 'RcHm_v2.0_Chr2g0110331' => 'rch', 'RcHm_v2.0_Chr2g0138551' => 'rch', 'RcHm_v2.0_Chr2g0138561' => 'rch', 'RcHm_v2.0_Chr2g0161821' => 'rch', 'RcHm_v2.0_Chr5g0062821' => 'rch', 'RcHm_v2.0_Chr6g0258891' => 'rch', 'RcHm_v2.0_Chr6g0258921' => 'rch', 'RcHm_v2.0_Chr6g0303421' => 'rch', 'Rhsim01G0178200' => 'rsi', 'Rhsim01G0190600' => 'rsi', 'Rhsim03G0036500' => 'rsi', 'Rhsim03G0213800' => 'rsi', 'Rhsim10G0120100' => 'rsi', 'Rhsim11G0168700' => 'rsi', 'Rhsim12G0022500' => 'rsi', 'RhsimUnG0011400' => 'rsi', 'Sabra02G0137000' => 'sbr', 'Sabra04G0095200' => 'sbr', 'Sabra04G0095300' => 'sbr', 'Sabra05G0093100' => 'sbr', 'Sabra05G0108700' => 'sbr', 'Sabra06G0027400' => 'sbr', 'Sabra07G0036500' => 'sbr', 'Sabra12G0010600' => 'sbr', 'Sabra14G0076100' => 'sbr', 'Sabra15G0004800' => 'sbr', 'Sabra16G0037800' => 'sbr', 'SalBow3G0585' => 'sbo', 'SalBow3G0818' => 'sbo', 'SalBow3G1988' => 'sbo', 'Sc03g0001400' => 'sci', 'Sc08g0000050' => 'sci', 'Sc13g0001050' => 'sci', 'Sc13g0010150' => 'sci', 'Sc19g0008120' => 'sci', 'Sc23g0001900' => 'sci', 'Sc26g0000480' => 'sci', 'Sed0000646' => 'sed', 'Sed0002538' => 'sed', 'Sed0004623' => 'sed', 'Sed0012523' => 'sed', 'Sed0016569' => 'sed', 'Sed0017002' => 'sed', 'Sed0018700' => 'sed', 'Sed0022220' => 'sed', 'Sed0027204' => 'sed', 'SEGI_02620' => 'sgi', 'SEGI_04730' => 'sgi', 'SEGI_22813' => 'sgi', 'SEGI_25999' => 'sgi', 'SEGI_39335' => 'sgi', 'SGA_v2.0_scaffold106G30528' => 'sas', 'SGA_v2.0_scaffold141G35539' => 'sas', 'SGA_v2.0_scaffold15G07259' => 'sas', 'SGA_v2.0_scaffold179G39590' => 'sas', 'SGA_v2.0_scaffold204G41593' => 'sas', 'SGA_v2.0_scaffold240G44117' => 'sas', 'SGA_v2.0_scaffold32G13091' => 'sas', 'SGA_v2.0_scaffold5G03054' => 'sas', 'SGA_v2.0_scaffold69G23163' => 'sas', 'SGA_v2.0_scaffold86G26913' => 'sas', 'SHI13021' => 'shi', 'SHI13025' => 'shi', 'SHI13026' => 'shi', 'SHI24522' => 'shi', 'SMO145G0095' => 'smo', 'SMO367G0274' => 'smo', 'Solyc01g096350.3' => 'sly', 'Solyc01g108400.3' => 'sly', 'Solyc02g065070.3' => 'sly', 'Solyc02g090510.3' => 'sly', 'Solyc03g082500.4' => 'sly', 'Solyc04g025460.2' => 'sly', 'Solyc04g049100.1' => 'sly', 'Solyc05g041110.3' => 'sly', 'Solyc06g008830.1' => 'sly', 'Solyc08g062990.1' => 'sly', 'Solyc10g050080.3' => 'sly', 'Solyc10g061860.1' => 'sly', 'Solyc10g078390.3' => 'sly', 'Sopen01g006490' => 'spe', 'Sopen01g040100' => 'spe', 'Sopen01g050620' => 'spe', 'Sopen02g035180' => 'spe', 'Sopen03g022230' => 'spe', 'Sopen05g015230' => 'spe', 'Sopen08g019940' => 'spe', 'Sopen10g029050' => 'spe', 'Sp1g36450' => 'spa', 'Sp2g22900' => 'spa', 'Sp3g17180' => 'spa', 'Sp4g23450' => 'spa', 'Sp4g28740' => 'spa', 'Sp5g05810' => 'spa', 'Sp5g11670' => 'spa', 'Sp5g12700' => 'spa', 'Sp7g33850' => 'spa', 'SpUn0190_0010' => 'spa', 'SpUn0190_0020' => 'spa', 'TAR224G0001' => 'tar', 'TAR375G0165' => 'tar', 'TAR376G0794' => 'tar', 'TAR381G1157' => 'tar', 'TAR440G0001' => 'tar', 'TAR623G0257' => 'tar', 'TAR623G0282' => 'tar', 'TAR623G1348' => 'tar', 'TAR625G0854' => 'tar', 'TAR627G0641' => 'tar', 'TAR628G1319' => 'tar', 'TAR629G1566' => 'tar', 'TAR633G0431' => 'tar', 'TAR633G1460' => 'tar', 'TAR636G1151' => 'tar', 'TAR636G3042' => 'tar', 'TAR636G3590' => 'tar', 'THA.LOC104801601' => 'tha', 'THA.LOC104801871' => 'tha', 'THA.LOC104802090' => 'tha', 'THA.LOC104803257' => 'tha', 'THA.LOC104815727' => 'tha', 'THA.LOC104819747' => 'tha', 'THA.LOC104821270' => 'tha', 'THA.LOC104827028' => 'tha', 'Thecc.01G052000' => 'tca', 'Thecc.01G335800' => 'tca', 'Thecc.02G097200' => 'tca', 'Thecc.03G206600' => 'tca', 'Thecc.05G126900' => 'tca', 'Thhalv10001366m.g' => 'esa', 'Thhalv10003876m.g' => 'esa', 'Thhalv10005861m.g' => 'esa', 'Thhalv10010211m.g' => 'esa', 'Thhalv10010221m.g' => 'esa', 'Thhalv10011327m.g' => 'esa', 'Thhalv10011937m.g' => 'esa', 'Thhalv10016437m.g' => 'esa', 'Thhalv10020326m.g' => 'esa', 'Thhalv10023098m.g' => 'esa', 'Thhalv10027243m.g' => 'esa', 'TPR.G16095' => 'tpr', 'TPR.G19015' => 'tpr', 'TPR.G23522' => 'tpr', 'TPR.G31099' => 'tpr', 'TPR.G33619' => 'tpr', 'TPR.G4693' => 'tpr', 'TWI09G1160' => 'twi', 'TWI23G0505' => 'twi', 'TWI31G1362' => 'twi', 'TWI39G0450' => 'twi', 'TWI53G0758' => 'twi', 'TWI53G1637' => 'twi', 'TWI59G0749' => 'twi', 'TWI73G0155' => 'twi', 'TWI74G0275' => 'twi', 'TWI77G0916' => 'twi', 'TWI79G0677' => 'twi', 'unitig_0.g2664' => 'ugi', 'unitig_26.g9485' => 'ugi', 'unitig_26.g9486' => 'ugi', 'unitig_62.g23854' => 'ugi', 'unitig_62.g23856' => 'ugi', 'unitig_64.g29779' => 'ugi', 'unitig_64.g29780' => 'ugi', 'unitig_736.g22660' => 'ugi', 'unitig_736.g22893' => 'ugi', 'unitig_749.g13557' => 'ugi', 'unitig_899.g15590' => 'ugi', 'unitig_90.g27515' => 'ugi', 'unitig_90.g27516' => 'ugi', 'vmacro02179' => 'vma', 'vmacro05324' => 'vma', 'vmacro06426' => 'vma', 'vmacro07778' => 'vma', 'vmacro12654' => 'vma', 'vmacro17932' => 'vma', 'vmacro17933' => 'vma', 'vmacro18412' => 'vma', 'VMungo0251G1491' => 'vmu', 'VMungo0251G3067' => 'vmu', 'VMungo0251G3473' => 'vmu', 'VMungo0331G0600' => 'vmu', 'VMungo0464G1018' => 'vmu', 'VMungo0720G1525' => 'vmu', 'VMungo1080G1042' => 'vmu', 'VMungo1215G2611' => 'vmu', 'VMungo1309G2993' => 'vmu', 'VMungo1383G0723' => 'vmu', 'VMungo1383G1446' => 'vmu', 'VMungo1383G3476' => 'vmu', 'Zm00001eb017850' => 'zma', 'Zm00001eb043750' => 'zma', 'Zm00001eb085920' => 'zma', 'Zm00001eb085930' => 'zma', 'Zm00001eb092830' => 'zma', 'Zm00001eb093950' => 'zma', 'Zm00001eb094770' => 'zma', 'Zm00001eb109500' => 'zma', 'Zm00001eb110250' => 'zma', 'Zm00001eb132950' => 'zma', 'Zm00001eb145760' => 'zma', 'Zm00001eb170980' => 'zma', 'Zm00001eb206710' => 'zma', 'Zm00001eb220460' => 'zma', 'Zm00001eb227950' => 'zma', 'Zm00001eb233750' => 'zma', 'Zm00001eb272410' => 'zma', 'Zm00001eb283170' => 'zma', 'Zm00001eb320560' => 'zma', 'Zm00001eb327690' => 'zma', 'Zm00001eb328990' => 'zma', 'Zm00001eb394250' => 'zma' ) $gf_id = 'HOM05D000591' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000591' ) $data_identifier = 'HOM05D000591' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 12, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 18, 'cpa' => (int) 6, 'cre' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 14, 'lonja' => (int) 14, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 8, 'spa' => (int) 11, 'tar' => (int) 17, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 13, 'vma' => (int) 8, 'vmu' => (int) 12, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb394250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1